HL_9BH5_068

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

UCCUUUUAUA

Length

10 nucleotides

Bulged bases

9BH5|1|A5|C|3463, 9BH5|1|A5|U|3464, 9BH5|1|A5|U|3469

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BH5_068 not in the Motif Atlas

Geometric match to HL_2Y8Y_001

Geometric discrepancy: 0.2995

The information below is about HL_2Y8Y_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

9BH5|1|A5|U|3461
9BH5|1|A5|C|3462
9BH5|1|A5|C|3463
9BH5|1|A5|U|3464
9BH5|1|A5|U|3465
9BH5|1|A5|U|3466
9BH5|1|A5|U|3467
9BH5|1|A5|A|3468
9BH5|1|A5|U|3469
9BH5|1|A5|A|3470

Current chains

Chain A5

28S rRNA

Nearby chains

Chain AI

Small ribosomal subunit protein eS8

Chain CU

Large ribosomal subunit protein eL22