HL_9BH5_074
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- AUUGAUUCUGU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BH5_074 not in the Motif Atlas
- Homologous match to HL_8C3A_192
- Geometric discrepancy: 0.0578
- The information below is about HL_8C3A_192
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89881.3
- Basepair signature
- cWW-tHW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9BH5|1|B2|A|8
9BH5|1|B2|U|9
9BH5|1|B2|U|10
9BH5|1|B2|G|11
9BH5|1|B2|A|12
9BH5|1|B2|U|13
9BH5|1|B2|U|14
9BH5|1|B2|C|15
9BH5|1|B2|U|16
9BH5|1|B2|G|17
9BH5|1|B2|U|18
Current chains
- Chain B2
- 18S rRNA
Nearby chains
- Chain AC
- Small ribosomal subunit protein uS5
- Chain AX
- Small ribosomal subunit protein uS12
Coloring options: