HL_9BH5_076

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GAAAUAC

Length

7 nucleotides

Bulged bases

9BH5|1|B2|U|142, 9BH5|1|B2|A|143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BH5_076 not in the Motif Atlas

Homologous match to HL_8C3A_194

Geometric discrepancy: 0.1216

The information below is about HL_8C3A_194

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

9BH5|1|B2|G|138
9BH5|1|B2|A|139
9BH5|1|B2|A|140
9BH5|1|B2|A|141
9BH5|1|B2|U|142
9BH5|1|B2|A|143
9BH5|1|B2|C|144

Current chains

Chain B2

18S rRNA

Nearby chains

Chain AG

Small ribosomal subunit protein eS6

Chain AY

Small ribosomal subunit protein eS24