HL_9BH5_086

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

UGCUCAAUA

Length

9 nucleotides

Bulged bases

9BH5|1|B2|G|733, 9BH5|1|B2|U|735

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BH5_086 not in the Motif Atlas

Homologous match to HL_4V88_203

Geometric discrepancy: 0.3655

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

9BH5|1|B2|U|732
9BH5|1|B2|G|733
9BH5|1|B2|C|734
9BH5|1|B2|U|735
9BH5|1|B2|C|736
9BH5|1|B2|A|737
9BH5|1|B2|A|738
9BH5|1|B2|U|739
9BH5|1|B2|A|740

Current chains

Chain B2

18S rRNA

Nearby chains

Chain AE

Small ribosomal subunit protein eS4

Chain AJ

Small ribosomal subunit protein uS4

Chain AY

Small ribosomal subunit protein eS24