HL_9BH5_087

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CGCUUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BH5_087 not in the Motif Atlas

Homologous match to HL_4V88_204

Geometric discrepancy: 0.5545

The information below is about HL_4V88_204

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.1

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

9BH5|1|B2|C|745
9BH5|1|B2|G|746
9BH5|1|B2|C|747
9BH5|1|B2|U|748
9BH5|1|B2|U|749
9BH5|1|B2|G|750

Current chains

Chain B2

18S rRNA

Nearby chains

Chain AY

Small ribosomal subunit protein eS24