HL_9BH5_089

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BH5_089 not in the Motif Atlas

Homologous match to HL_4V88_207

Geometric discrepancy: 0.072

The information below is about HL_4V88_207

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

9BH5|1|B2|C|902
9BH5|1|B2|G|903
9BH5|1|B2|A|904
9BH5|1|B2|A|905
9BH5|1|B2|A|906
9BH5|1|B2|G|907

Current chains

Chain B2

18S rRNA

Nearby chains

Chain AN

Small ribosomal subunit protein uS15

Chain Aa

Small ribosomal subunit protein eS26