HL_9BH5_098

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

UGUUUAG

Length

7 nucleotides

Bulged bases

9BH5|1|B2|U|1357

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BH5_098 not in the Motif Atlas

Geometric match to HL_6CZR_090

Geometric discrepancy: 0.2651

The information below is about HL_6CZR_090

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

9BH5|1|B2|U|1354
9BH5|1|B2|G|1355
9BH5|1|B2|U|1356
9BH5|1|B2|U|1357
9BH5|1|B2|U|1358
9BH5|1|B2|A|1359
9BH5|1|B2|G|1360

Current chains

Chain B2

18S rRNA

Nearby chains

Chain AR

Small ribosomal subunit protein eS17