HL_9BH5_103

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CAGUUGGGAG

Length

10 nucleotides

Bulged bases

9BH5|1|DA|G|19

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BH5_103 not in the Motif Atlas

Homologous match to HL_3KFU_004

Geometric discrepancy: 0.1623

The information below is about HL_3KFU_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BH5|1|DA|C|13
9BH5|1|DA|A|14
9BH5|1|DA|G|15
9BH5|1|DA|U|16
9BH5|1|DA|U|17
9BH5|1|DA|G|18
9BH5|1|DA|G|19
9BH5|1|DA|G|20
9BH5|1|DA|A|21
9BH5|1|DA|G|22

Current chains

Chain DA

tRNA

Nearby chains

Chain A5

Large subunit ribosomal RNA; LSU rRNA

Chain CJ

Large ribosomal subunit protein uL5B

Chain Co

Large ribosomal subunit protein eL42