HL_9BH5_108
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- GUUCGAUCC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BH5_108 not in the Motif Atlas
- Homologous match to HL_4YYE_003
- Geometric discrepancy: 0.1151
- The information below is about HL_4YYE_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.5
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 138
Unit IDs
9BH5|1|DB|G|53
9BH5|1|DB|U|54
9BH5|1|DB|U|55
9BH5|1|DB|C|56
9BH5|1|DB|G|57
9BH5|1|DB|A|58
9BH5|1|DB|U|59
9BH5|1|DB|C|60
9BH5|1|DB|C|61
Current chains
- Chain DB
- tRNA
Nearby chains
- Chain A5
- Large subunit ribosomal RNA; LSU rRNA
- Chain CI
- Large ribosomal subunit protein uL16
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