HL_9BH5_109
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- UGUUAAAA
- Length
- 8 nucleotides
- Bulged bases
- 9BH5|1|A5|U|719, 9BH5|1|A5|A|721
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BH5_109 not in the Motif Atlas
- Geometric match to HL_5J7L_151
- Geometric discrepancy: 0.2371
- The information below is about HL_5J7L_151
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_80922.2
- Basepair signature
- cWW-tSH-F
- Number of instances in this motif group
- 3
Unit IDs
9BH5|1|A5|U|716
9BH5|1|A5|G|717
9BH5|1|A5|U|718
9BH5|1|A5|U|719
9BH5|1|A5|A|720
9BH5|1|A5|A|721
9BH5|1|A5|A|722
9BH5|1|A5|A|723
Current chains
- Chain A5
- 28S rRNA
Nearby chains
- Chain A8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CC
- Large ribosomal subunit protein uL4
- Chain CL
- Large ribosomal subunit protein eL13
- Chain CN
- Large ribosomal subunit protein eL15
- Chain CY
- Large ribosomal subunit protein uL24
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