HL_9BH5_112

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

AUUGAAAGCU

Length

10 nucleotides

Bulged bases

9BH5|1|B2|A|1202, 9BH5|1|B2|G|1204

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BH5_112 not in the Motif Atlas

Homologous match to HL_8P9A_216

Geometric discrepancy: 0.2435

The information below is about HL_8P9A_216

Detailed Annotation

GNRA with extra near cWW

Broad Annotation

GNRA with extra near cWW

Motif group

HL_98423.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9BH5|1|B2|A|1197
9BH5|1|B2|U|1198
9BH5|1|B2|U|1199
9BH5|1|B2|G|1200
9BH5|1|B2|A|1201
9BH5|1|B2|A|1202
9BH5|1|B2|A|1203
9BH5|1|B2|G|1204
9BH5|1|B2|C|1205
9BH5|1|B2|U|1206

Current chains

Chain B2

18S rRNA

Nearby chains

Chain AP

Small ribosomal subunit protein uS19

Chain Ad

Small ribosomal subunit protein uS14

Chain Af

Ubiquitin-like protein 1-ribosomal protein eS31 fusion protein