HL_9BKD_007
3D structure
- PDB id
- 9BKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of human Pdcd4 bound to the 40S small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GUCGCCGUGCC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BKD_007 not in the Motif Atlas
- Geometric match to HL_8GLP_091
- Geometric discrepancy: 0.061
- The information below is about HL_8GLP_091
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50525.1
- Basepair signature
- cWW-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
9BKD|1|A|G|377
9BKD|1|A|U|378
9BKD|1|A|C|379
9BKD|1|A|G|380
9BKD|1|A|C|381
9BKD|1|A|C|382
9BKD|1|A|G|383
9BKD|1|A|U|384
9BKD|1|A|G|385
9BKD|1|A|C|386
9BKD|1|A|C|387
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain B
- Small ribosomal subunit protein uS17
- Chain R
- Small ribosomal subunit protein eS8
Coloring options: