HL_9BKD_009
3D structure
- PDB id
- 9BKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of human Pdcd4 bound to the 40S small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 9BKD|1|A|G|451
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BKD_009 not in the Motif Atlas
- Homologous match to HL_4V88_195
- Geometric discrepancy: 0.0657
- The information below is about HL_4V88_195
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9BKD|1|A|C|441
9BKD|1|A|C|442
9BKD|1|A|U|443
9BKD|1|A|G|444
9BKD|1|A|A|445
9BKD|1|A|G|446
9BKD|1|A|A|447
9BKD|1|A|A|448
9BKD|1|A|A|449
9BKD|1|A|C|450
9BKD|1|A|G|451
9BKD|1|A|G|452
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain C
- Small ribosomal subunit protein eS4, X isoform
- Chain R
- Small ribosomal subunit protein eS8
- Chain S
- Small ribosomal subunit protein eS6
- Chain T
- Small ribosomal subunit protein eS24
Coloring options: