HL_9BKD_010

3D structure

PDB id

9BKD (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

9BKD|1|A|A|464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BKD_010 not in the Motif Atlas

Homologous match to HL_8C3A_202

Geometric discrepancy: 0.1119

The information below is about HL_8C3A_202

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

54

Unit IDs

9BKD|1|A|C|462
9BKD|1|A|C|463
9BKD|1|A|A|464
9BKD|1|A|A|465
9BKD|1|A|G|466
9BKD|1|A|G|467

Current chains

Chain A

18S rRNA

Nearby chains

Chain S

Small ribosomal subunit protein eS6