HL_9BKD_029

3D structure

PDB id

9BKD (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BKD_029 not in the Motif Atlas

Homologous match to HL_8C3A_222

Geometric discrepancy: 0.313

The information below is about HL_8C3A_222

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37369.1

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

8

Unit IDs

9BKD|1|A|C|1460
9BKD|1|A|G|1461
9BKD|1|A|U|1462
9BKD|1|A|U|1463
9BKD|1|A|C|1464
9BKD|1|A|A|1465
9BKD|1|A|G|1466

Current chains

Chain A

18S rRNA

Nearby chains

Chain M

40S ribosomal protein S17

Chain c

Receptor of activated protein C kinase 1