HL_9BKD_031
3D structure
- PDB id
- 9BKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of human Pdcd4 bound to the 40S small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- AUUGCAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 9BKD|1|A|A|1623
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BKD_031 not in the Motif Atlas
- Homologous match to HL_4V88_219
- Geometric discrepancy: 0.1358
- The information below is about HL_4V88_219
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_03273.1
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
9BKD|1|A|A|1614
9BKD|1|A|U|1615
9BKD|1|A|U|1616
9BKD|1|A|G|1617
9BKD|1|A|C|1618
9BKD|1|A|A|1619
9BKD|1|A|A|1620
9BKD|1|A|U|1621
9BKD|1|A|U|1622
9BKD|1|A|A|1623
9BKD|1|A|U|1624
9BKD|1|A|U|1625
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain b
- 40S ribosomal protein S15
- Chain f
- Small ribosomal subunit protein uS13
- Chain i
- 40S ribosomal protein S29
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