HL_9BLN_011

3D structure

PDB id

9BLN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

9BLN|1|A|C|502, 9BLN|1|A|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BLN_011 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.2509

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

9BLN|1|A|C|498
9BLN|1|A|G|499
9BLN|1|A|A|500
9BLN|1|A|C|501
9BLN|1|A|C|502
9BLN|1|A|C|503
9BLN|1|A|G|504

Current chains

Chain A

rRNA

Nearby chains

Chain C

Small ribosomal subunit protein eS4, X isoform

Chain T

Small ribosomal subunit protein eS24