HL_9BLN_020

3D structure

PDB id

9BLN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

9BLN|1|A|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BLN_020 not in the Motif Atlas

Homologous match to HL_4V88_208

Geometric discrepancy: 0.1184

The information below is about HL_4V88_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

9BLN|1|A|G|1054
9BLN|1|A|A|1055
9BLN|1|A|U|1056
9BLN|1|A|C|1057
9BLN|1|A|A|1058
9BLN|1|A|G|1059
9BLN|1|A|A|1060
9BLN|1|A|U|1061
9BLN|1|A|A|1062
9BLN|1|A|C|1063
9BLN|1|A|C|1064

Current chains

Chain A

rRNA

Nearby chains

Chain P

40S ribosomal protein S14

Chain W

Eukaryotic translation initiation factor 1