HL_9BLN_027

3D structure

PDB id

9BLN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

9BLN|1|A|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BLN_027 not in the Motif Atlas

Homologous match to HL_8C3A_220

Geometric discrepancy: 0.092

The information below is about HL_8C3A_220

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

9BLN|1|A|G|1366
9BLN|1|A|U|1367
9BLN|1|A|U|1368
9BLN|1|A|A|1369
9BLN|1|A|A|1370
9BLN|1|A|U|1371
9BLN|1|A|U|1372
9BLN|1|A|C|1373

Current chains

Chain A

rRNA

Nearby chains

Chain M

Small ribosomal subunit protein eS17