HL_9BS0_004

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGUAAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BS0_004 not in the Motif Atlas

Homologous match to HL_4WF9_004

Geometric discrepancy: 0.2775

The information below is about HL_4WF9_004

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.1

Basepair signature

cWW-F

Number of instances in this motif group

10

Unit IDs

9BS0|1|A|C|136
9BS0|1|A|G|137
9BS0|1|A|U|138
9BS0|1|A|A|139
9BS0|1|A|A|140
9BS0|1|A|U|141
9BS0|1|A|G|142
9BS0|1|A|G|143

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

Large ribosomal subunit protein uL23