HL_9BS0_010

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

9BS0|1|A|A|355

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BS0_010 not in the Motif Atlas

Homologous match to HL_4WF9_010

Geometric discrepancy: 0.1918

The information below is about HL_4WF9_010

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

21

Unit IDs

9BS0|1|A|C|349
9BS0|1|A|U|350
9BS0|1|A|G|351
9BS0|1|A|G|352
9BS0|1|A|A|353
9BS0|1|A|A|354
9BS0|1|A|A|355
9BS0|1|A|G|356

Current chains

Chain A

23S rRNA

Nearby chains

Chain P

Large ribosomal subunit protein uL24