HL_9BS0_014

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

9BS0|1|A|G|458, 9BS0|1|A|A|459

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BS0_014 not in the Motif Atlas

Homologous match to HL_9DFE_013

Geometric discrepancy: 0.3939

The information below is about HL_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30680.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9BS0|1|A|G|457
9BS0|1|A|G|458
9BS0|1|A|A|459
9BS0|1|A|C|460
9BS0|1|A|C|461
9BS0|1|A|A|462
9BS0|1|A|U|463
9BS0|1|A|C|464

Current chains

Chain A

23S rRNA

Nearby chains

Chain Y

Large ribosomal subunit protein uL1