HL_9BS0_023

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGUUGAAAAG

Length

10 nucleotides

Bulged bases

9BS0|1|A|U|793, 9BS0|1|A|U|794, 9BS0|1|A|A|798, 9BS0|1|A|A|799

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BS0_023 not in the Motif Atlas

Homologous match to HL_4WF9_023

Geometric discrepancy: 0.1428

The information below is about HL_4WF9_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50204.1

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

11

Unit IDs

9BS0|1|A|C|791
9BS0|1|A|G|792
9BS0|1|A|U|793
9BS0|1|A|U|794
9BS0|1|A|G|795
9BS0|1|A|A|796
9BS0|1|A|A|797
9BS0|1|A|A|798
9BS0|1|A|A|799
9BS0|1|A|G|800

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

Large ribosomal subunit protein uL22

Chain T

Large ribosomal subunit protein bL32

Chain U

Large ribosomal subunit protein bL34