HL_9BS0_025

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUUUAGGG

Length

8 nucleotides

Bulged bases

9BS0|1|A|U|873, 9BS0|1|A|U|874, 9BS0|1|A|G|877

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BS0_025 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.2843

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

9BS0|1|A|C|872
9BS0|1|A|U|873
9BS0|1|A|U|874
9BS0|1|A|U|875
9BS0|1|A|A|876
9BS0|1|A|G|877
9BS0|1|A|G|878
9BS0|1|A|G|879

Current chains

Chain A

23S rRNA

Nearby chains

Chain I

Large ribosomal subunit protein uL15