HL_9BS0_026

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAUAAGA

Length

8 nucleotides

Bulged bases

9BS0|1|A|A|1003, 9BS0|1|A|U|1004, 9BS0|1|A|G|1007

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BS0_026 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.5224

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

9BS0|1|A|U|1001
9BS0|1|A|G|1002
9BS0|1|A|A|1003
9BS0|1|A|U|1004
9BS0|1|A|A|1005
9BS0|1|A|A|1006
9BS0|1|A|G|1007
9BS0|1|A|A|1008

Current chains

Chain A

23S rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA