HL_9BS0_043
3D structure
- PDB id
- 9BS0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- YphC-treated 45SYphC particle. Class 5
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UUUAGCAAAAA
- Length
- 11 nucleotides
- Bulged bases
- 9BS0|1|A|A|1809, 9BS0|1|A|G|1810, 9BS0|1|A|C|1811, 9BS0|1|A|A|1815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BS0_043 not in the Motif Atlas
- Homologous match to HL_4WF9_043
- Geometric discrepancy: 0.1412
- The information below is about HL_4WF9_043
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_87681.1
- Basepair signature
- cWW-cWW-tWH-F-tWH-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
9BS0|1|A|U|1806
9BS0|1|A|U|1807
9BS0|1|A|U|1808
9BS0|1|A|A|1809
9BS0|1|A|G|1810
9BS0|1|A|C|1811
9BS0|1|A|A|1812
9BS0|1|A|A|1813
9BS0|1|A|A|1814
9BS0|1|A|A|1815
9BS0|1|A|A|1816
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain C
- Large ribosomal subunit protein uL2
- Chain U
- Large ribosomal subunit protein bL34
Coloring options: