HL_9BS0_047

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUUAUCG

Length

7 nucleotides

Bulged bases

9BS0|1|A|U|2240, 9BS0|1|A|U|2242

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BS0_047 not in the Motif Atlas

Homologous match to HL_5J7L_185

Geometric discrepancy: 0.1494

The information below is about HL_5J7L_185

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49922.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

9BS0|1|A|C|2238
9BS0|1|A|U|2239
9BS0|1|A|U|2240
9BS0|1|A|A|2241
9BS0|1|A|U|2242
9BS0|1|A|C|2243
9BS0|1|A|G|2244

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2