HL_9BS0_051

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGUAGUCG

Length

8 nucleotides

Bulged bases

9BS0|1|A|G|2558

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BS0_051 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.4747

The information below is about HL_5J7L_194

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

9BS0|1|A|U|2557
9BS0|1|A|G|2558
9BS0|1|A|U|2559
9BS0|1|A|A|2560
9BS0|1|A|G|2561
9BS0|1|A|U|2562
9BS0|1|A|C|2563
9BS0|1|A|G|2564

Current chains

Chain A

23S rRNA

Nearby chains