HL_9BS0_056

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

9BS0|1|A|G|2780, 9BS0|1|A|C|2784

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BS0_056 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.252

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

9BS0|1|A|C|2774
9BS0|1|A|U|2775
9BS0|1|A|G|2776
9BS0|1|A|A|2777
9BS0|1|A|A|2778
9BS0|1|A|A|2779
9BS0|1|A|G|2780
9BS0|1|A|C|2781
9BS0|1|A|A|2782
9BS0|1|A|U|2783
9BS0|1|A|C|2784
9BS0|1|A|U|2785
9BS0|1|A|A|2786
9BS0|1|A|A|2787
9BS0|1|A|G|2788

Current chains

Chain A

23S rRNA

Nearby chains

Chain F

Large ribosomal subunit protein uL6

Chain G

Large ribosomal subunit protein uL13