HL_9BSS_038

3D structure

PDB id

9BSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

45SRbgA particle in complex with RbgA and YphC. Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUUAGCAAAAA

Length

11 nucleotides

Bulged bases

9BSS|1|A|A|1809, 9BSS|1|A|G|1810, 9BSS|1|A|C|1811, 9BSS|1|A|A|1815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BSS_038 not in the Motif Atlas

Homologous match to HL_4WF9_043

Geometric discrepancy: 0.1448

The information below is about HL_4WF9_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.3

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

10

Unit IDs

9BSS|1|A|U|1806
9BSS|1|A|U|1807
9BSS|1|A|U|1808
9BSS|1|A|A|1809
9BSS|1|A|G|1810
9BSS|1|A|C|1811
9BSS|1|A|A|1812
9BSS|1|A|A|1813
9BSS|1|A|A|1814
9BSS|1|A|A|1815
9BSS|1|A|A|1816

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2

Chain U

Large ribosomal subunit protein bL34

Chain V

Ribosome biogenesis GTPase A