HL_9BSS_045

3D structure

PDB id

9BSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

45SRbgA particle in complex with RbgA and YphC. Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGUUCG

Length

7 nucleotides

Bulged bases

9BSS|1|A|G|2582, 9BSS|1|A|C|2585

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BSS_045 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3016

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

9BSS|1|A|C|2580
9BSS|1|A|U|2581
9BSS|1|A|G|2582
9BSS|1|A|U|2583
9BSS|1|A|U|2584
9BSS|1|A|C|2585
9BSS|1|A|G|2586

Current chains

Chain A

23S rRNA

Nearby chains

Chain V

Ribosome biogenesis GTPase A