HL_9BSS_054

3D structure

PDB id

9BSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

45SRbgA particle in complex with RbgA and YphC. Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUUC

Length

5 nucleotides

Bulged bases

9BSS|1|B|U|85, 9BSS|1|B|U|87

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BSS_054 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.1882

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

9BSS|1|B|G|84
9BSS|1|B|U|85
9BSS|1|B|U|86
9BSS|1|B|U|87
9BSS|1|B|C|88

Current chains

Chain B

5S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA