HL_9BUP_006

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAUAG

Length

5 nucleotides

Bulged bases

9BUP|1|AA|U|218, 9BUP|1|AA|A|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BUP_006 not in the Motif Atlas

Geometric match to HL_8CRE_006

Geometric discrepancy: 0.0397

The information below is about HL_8CRE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

9BUP|1|AA|C|216
9BUP|1|AA|A|217
9BUP|1|AA|U|218
9BUP|1|AA|A|219
9BUP|1|AA|G|220

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AF

60S ribosomal protein L4

Chain AZ

60S ribosomal protein L26