9BUP Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9BUP_001 | 1/AA/38:45 | No text annotation | homologous HL_8P9A_113 HL_48677.1 | |
| HL_9BUP_002 | 1/AA/69:74 | No text annotation | homologous HL_8CRE_002 NA | |
| HL_9BUP_003 | 1/AA/90:96 | No text annotation | homologous HL_8CRE_003 NA | |
| HL_9BUP_004 | 1/AA/136:141 | GNRA | geometric HL_6N2V_003 HL_34789.2 | |
| HL_9BUP_005 | 1/AA/202:209 | T-loop with 1 bulged base | homologous HL_8P9A_117 HL_13999.2 | |
| HL_9BUP_006 | 1/AA/216:220 | No text annotation | geometric HL_8CRE_006 NA | |
| HL_9BUP_007 | 1/AA/224:232 | T-loop with unstacked turn | homologous HL_8CRE_007 NA | |
| HL_9BUP_008 | 1/AA/285:294 | T-loop related | homologous HL_8P9A_120 HL_63894.2 | |
| HL_9BUP_009 | 1/AA/311:320 | No text annotation | homologous HL_8CRE_009 NA | |
| HL_9BUP_010 | 1/AA/365:370 | GNRA | homologous HL_8P9A_122 HL_34789.2 | |
| HL_9BUP_011 | 1/AA/391:396 | GNRA | homologous HL_8P9A_123 HL_34789.2 | |
| HL_9BUP_012 | 1/AA/591:600 | No text annotation | ||
| HL_9BUP_013 | 1/AA/594:599 | No text annotation | ||
| HL_9BUP_014 | 1/AA/663:670 | No text annotation | geometric HL_2Y9H_005 HL_44506.2 | |
| HL_9BUP_015 | 1/AA/718:727 | T-loop with 2 stacked bulged bases | homologous HL_8CRE_013 NA | |
| HL_9BUP_016 | 1/AA/764:775 | No text annotation | homologous HL_8P9A_127 HL_18470.2 | |
| HL_9BUP_017 | 1/AA/801:806 | GNRA | homologous HL_8CRE_015 NA | |
| HL_9BUP_018 | 1/AA/963:968 | GNRA | homologous HL_8P9A_131 HL_34789.2 | |
| HL_9BUP_019 | 1/AA/995:1004 | No text annotation | homologous HL_8CRE_019 NA | |
| HL_9BUP_020 | 1/AA/1029:1037 | No text annotation | homologous HL_8P9A_133 HL_92598.1 | |
| HL_9BUP_021 | 1/AA/1077:1082 | No text annotation | homologous HL_8P9A_134 HL_27530.1 | |
| HL_9BUP_022 | 1/AA/1200:1208 | T-loop related | homologous HL_8CRE_023 NA | |
| HL_9BUP_023 | 1/AA/1254:1260 | GNRA | homologous HL_8CRE_024 NA | |
| HL_9BUP_024 | 1/AA/1276:1283 | No text annotation | homologous HL_8P9A_138 HL_47171.1 | |
| HL_9BUP_025 | 1/AA/1551:1556 | GNRA | homologous HL_8CRE_029 NA | |
| HL_9BUP_026 | 1/AA/1611:1619 | T-loop with 2 stacked bulged bases | homologous HL_8CRE_030 NA | |
| HL_9BUP_027 | 1/AA/1654:1662 | No text annotation | ||
| HL_9BUP_028 | 1/AA/1693:1698 | GNRA variation | homologous HL_8CRE_032 NA | |
| HL_9BUP_029 | 1/AA/1742:1751 | No text annotation | homologous HL_8CRE_034 NA | |
| HL_9BUP_030 | 1/AA/1783:1788 | GNRA | homologous HL_8CRE_035 NA | |
| HL_9BUP_031 | 1/AA/1835:1843 | Pseudoknot geometry | homologous HL_8CRE_036 NA | |
| HL_9BUP_032 | 1/AA/1876:1882 | No text annotation | homologous HL_8P9A_149 HL_97067.1 | |
| HL_9BUP_033 | 1/AA/2014:2018 | No text annotation | homologous HL_8CRE_039 NA | |
| HL_9BUP_034 | 1/AA/2111:2118 | No text annotation | homologous HL_8CRE_040 NA | |
| HL_9BUP_035 | 1/AA/2129:2135 | GNRA | homologous HL_8CRE_041 NA | |
| HL_9BUP_036 | 1/AA/2191:2196 | UNCG | homologous HL_8CRE_042 NA | |
| HL_9BUP_037 | 1/AA/2403:2407 | No text annotation | homologous HL_8CRE_043 NA | |
| HL_9BUP_038 | 1/AA/2428:2438 | No text annotation | homologous HL_8P9A_157 HL_87681.1 | |
| HL_9BUP_039 | 1/AA/2458:2463 | GNRA | homologous HL_8CRE_045 NA | |
| HL_9BUP_040 | 1/AA/2512:2519 | GNRA with extra cWH | geometric HL_7QR8_003 NA | |
| HL_9BUP_041 | 1/AA/2546:2556 | No text annotation | homologous HL_8CRE_047 NA | |
| HL_9BUP_042 | 1/AA/2585:2593 | No text annotation | homologous HL_8CRE_048 NA | |
| HL_9BUP_043 | 1/AA/2662:2671 | No text annotation | homologous HL_8P9A_162 HL_78372.1 | |
| HL_9BUP_044 | 1/AA/2955:2963 | No text annotation | homologous HL_8P9A_165 HL_11974.2 | |
| HL_9BUP_045 | 1/AA/2972:2984 | No text annotation | homologous HL_8CRE_054 NA | |
| HL_9BUP_046 | 1/AA/3012:3020 | No text annotation | homologous HL_8P9A_167 HL_02452.1 | |
| HL_9BUP_047 | 1/AA/3032:3039 | Pseudoknot geometry | homologous HL_8P9A_168 HL_52651.2 | |
| HL_9BUP_048 | 1/AA/3063:3071 | No text annotation | homologous HL_8CRE_057 NA | |
| HL_9BUP_049 | 1/AA/3083:3088 | GNRA | homologous HL_8P9A_170 HL_34789.2 | |
| HL_9BUP_050 | 1/AA/3127:3133 | No text annotation | geometric HL_2Y9H_005 HL_44506.2 | |
| HL_9BUP_051 | 1/AA/3199:3207 | No text annotation | homologous HL_8P9A_172 HL_52011.1 | |
| HL_9BUP_052 | 1/AA/3256:3263 | GNRA variation | homologous HL_8P9A_173 HL_46665.2 | |
| HL_9BUP_053 | 1/AA/3279:3285 | No text annotation | homologous HL_8CRE_062 NA | |
| HL_9BUP_054 | 1/AA/3322:3327 | GNRA | homologous HL_8CRE_063 NA | |
| HL_9BUP_055 | 1/AA/3411:3416 | GNRA | homologous HL_8P9A_176 HL_34789.2 | |
| HL_9BUP_056 | 1/AA/3453:3458 | No text annotation | homologous HL_8CRE_065 NA | |
| HL_9BUP_057 | 1/AA/3494:3509 | No text annotation | homologous HL_8CRE_066 NA | |
| HL_9BUP_058 | 1/AA/3697:3705 | No text annotation | homologous HL_8CRE_069 NA | |
| HL_9BUP_059 | 1/AB/32:45 | No text annotation | geometric HL_4V9F_074 HL_97756.3 | |
| HL_9BUP_060 | 1/AB/36:41 | No text annotation | homologous HL_5J7L_203 NA | |
| HL_9BUP_061 | 1/AB/86:91 | GNRA | homologous HL_8OI5_070 HL_34789.2 | |
| HL_9BUP_062 | 1/AC/51:60 | No text annotation | homologous HL_8CRE_074 NA | |
| HL_9BUP_063 | 1/AC/77:82 | GNRA | geometric HL_6JDV_001 HL_34789.2 | |
| HL_9BUP_064 | 1/AC/111:117 | No text annotation | homologous HL_8P9A_188 HL_13184.2 | |
| HL_9BUP_066 | 1/S7/27:41 | No text annotation | ||
| HL_9BUP_068 | 1/S8/13:22 | tRNA D-loop | homologous HL_5AXM_001 HL_20490.1 | |
| HL_9BUP_069 | 1/S8/31:39 | tRNA anticodon loop | homologous HL_4TUE_034 NA | |
| HL_9BUP_070 | 1/S8/53:61 | T-loop with 2 stacked bulged bases | homologous HL_6JXM_003 HL_33597.2 | |
| HL_9BUP_071 | 1/S9/13:22 | No text annotation | geometric HL_1N78_001 HL_78347.5 | |
| HL_9BUP_072 | 1/S9/31:39 | tRNA anticodon loop | homologous HL_7U2I_104 NA | |
| HL_9BUP_073 | 1/S9/53:61 | T-loop with 2 stacked bulged bases | homologous HL_4WT8_217 HL_33597.2 | |
| HL_9BUP_074 | 1/SA/7:17 | No text annotation | homologous HL_8CRE_191 HL_73535.1 | |
| HL_9BUP_075 | 1/SA/152:158 | GNRA related | homologous HL_8CRE_193 HL_34789.2 | |
| HL_9BUP_076 | 1/SA/245:252 | T-loop with 1 bulged base | homologous HL_8CRE_196 HL_67772.1 | |
| HL_9BUP_077 | 1/SA/336:344 | No text annotation | homologous HL_8CRE_198 HL_87268.1 | |
| HL_9BUP_078 | 1/SA/374:379 | No text annotation | homologous HL_8P9A_198 HL_93535.2 | |
| HL_9BUP_079 | 1/SA/399:410 | No text annotation | homologous HL_8P9A_199 HL_86432.1 | |
| HL_9BUP_080 | 1/SA/420:425 | UNCG | homologous HL_8CRE_201 HL_61337.2 | |
| HL_9BUP_081 | 1/SA/456:462 | No text annotation | homologous HL_8CRE_202 HL_89167.2 | |
| HL_9BUP_082 | 1/SA/528:538 | No text annotation | geometric HL_7K16_002 HL_14063.2 | |
| HL_9BUP_083 | 1/SA/576:581 | No text annotation | homologous HL_8CRE_205 HL_93535.2 | |
| HL_9BUP_084 | 1/SA/814:822 | No text annotation | homologous HL_8CRE_207 HL_11974.2 | |
| HL_9BUP_085 | 1/SA/969:978 | No text annotation | homologous HL_8P9A_209 HL_38491.2 | |
| HL_9BUP_086 | 1/SA/1006:1011 | GNRA | homologous HL_8P9A_210 HL_34789.2 | |
| HL_9BUP_087 | 1/SA/1066:1076 | No text annotation | homologous HL_8CRE_212 HL_38491.2 | |
| HL_9BUP_088 | 1/SA/1185:1190 | GNRA | homologous HL_8CRE_214 HL_34789.2 | |
| HL_9BUP_089 | 1/SA/1222:1227 | GNRA | homologous HL_8CRE_215 HL_34789.2 | |
| HL_9BUP_090 | 1/SA/1289:1298 | No text annotation | homologous HL_8CRE_216 HL_97521.1 | |
| HL_9BUP_091 | 1/SA/1411:1418 | T-loop related | homologous HL_8CRE_219 HL_63894.2 | |
| HL_9BUP_092 | 1/SA/1642:1648 | No text annotation | homologous HL_8CRE_221 HL_76371.2 | |
| HL_9BUP_093 | 1/SA/1797:1802 | GNRA | homologous HL_8CRE_222 HL_34789.2 | |
| HL_9BUP_094 | 1/SA/1847:1858 | No text annotation | homologous HL_8CRE_223 HL_50951.1 | |
| HL_9BUP_095 | 1/SA/1891:1899 | No text annotation | homologous HL_8P9A_223 NA | |
| HL_9BUP_096 | 1/SA/2070:2075 | GNRA variation | homologous HL_8CRE_225 HL_34789.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9BUP_065 | No text annotation | ||
| HL_9BUP_067 | T-loop with 2 stacked bulged bases |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9BUP_001 | 1/AA/13:15, 1/AC/151:152 | Single bulged U | homologous IL_8P9A_232 IL_97561.2 | |
| IL_9BUP_002 | 1/AA/31:38, 1/AA/45:53 | tSH-tHW-tHH-tHS | homologous IL_8CRE_005 NA | |
| IL_9BUP_003 | 1/AA/82:89, 1/AA/97:103 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8CRE_006 NA | |
| IL_9BUP_004 | 1/AA/118:123, 1/AA/158:159 | No text annotation | ||
| IL_9BUP_005 | 1/AA/118:124, 1/AA/153:159 | No text annotation | ||
| IL_9BUP_006 | 1/AA/123:124, 1/AA/153:158 | No text annotation | homologous IL_8CRE_007 NA | |
| IL_9BUP_007 | 1/AA/126:128, 1/AA/149:151 | Isolated non-canonical cWW pair | homologous IL_8P9A_237 IL_01003.2 | |
| IL_9BUP_008 | 1/AA/130:134, 1/AA/143:147 | Triple non-canonical cWW pairs | geometric IL_8VMB_003 IL_71154.2 | |
| IL_9BUP_009 | 1/AA/165:168, 1/AA/263:266 | Tandem non-canonical cWW pairs | geometric IL_6MWN_005 IL_71194.2 | |
| IL_9BUP_010 | 1/AA/173:175, 1/AA/255:258 | No text annotation | geometric IL_8P9A_292 IL_15698.5 | |
| IL_9BUP_011 | 1/AA/178:183, 1/AA/248:252 | No text annotation | ||
| IL_9BUP_012 | 1/AA/186:190, 1/AA/241:245 | Triple non-canonical cWW pairs | geometric IL_8DP3_002 IL_71154.2 | |
| IL_9BUP_013 | 1/AA/197:199, 1/AA/212:213 | Single bulged U | geometric IL_4V9F_013 IL_97561.2 | |
| IL_9BUP_015 | 1/AA/345:347, 1/AC/29:30 | Single bulged A | homologous IL_8P9A_242 IL_14190.2 | |
| IL_9BUP_016 | 1/AA/385:388, 1/AA/399:413 | No text annotation | ||
| IL_9BUP_017 | 1/AA/414:420, 1/AC/17:23 | No text annotation | homologous IL_8P9A_244 IL_22311.1 | |
| IL_9BUP_018 | 1/AA/436:438, 1/AA/709:711 | Isolated non-canonical cWW pair | geometric IL_4LFB_010 IL_01003.2 | |
| IL_9BUP_019 | 1/AA/444:446, 1/AA/701:703 | Isolated cWH basepair | geometric IL_4KTG_004 IL_10892.2 | |
| IL_9BUP_020 | 1/AA/519:522, 1/AA/633:636 | Tandem non-canonical cWW pairs | geometric IL_8CRE_134 NA | |
| IL_9BUP_021 | 1/AA/523:526, 1/AA/629:632 | Tandem non-canonical cWW pairs | geometric IL_8CRE_397 IL_71194.2 | |
| IL_9BUP_022 | 1/AA/529:533, 1/AA/619:626 | No text annotation | ||
| IL_9BUP_023 | 1/AA/584:586, 1/AA/605:606 | Single bulged C | geometric IL_5F5H_001 IL_05642.2 | |
| IL_9BUP_024 | 1/AA/591:594, 1/AA/599:600 | Stack outside cWW | geometric IL_5J7L_268 NA | |
| IL_9BUP_025 | 1/AA/658:661, 1/AA/672:675 | Tandem non-canonical cWW pairs | geometric IL_8ID2_001 IL_71194.2 | |
| IL_9BUP_026 | 1/AA/743:745, 1/AA/914:916 | Isolated non-canonical cWW pair | geometric IL_8PFQ_001 IL_01003.2 | |
| IL_9BUP_027 | 1/AA/827:833, 1/AA/861:868 | No text annotation | ||
| IL_9BUP_028 | 1/AA/875:876, 1/AA/898:900 | Single bulged A | homologous IL_8P9A_252 IL_14190.2 | |
| IL_9BUP_029 | 1/AA/880:881, 1/AA/892:894 | Single bulged U | geometric IL_4WF9_088 IL_97561.2 | |
| IL_9BUP_030 | 1/AA/922:924, 1/AA/1057:1059 | Isolated non-canonical cWW pair | homologous IL_8P9A_255 IL_01003.2 | |
| IL_9BUP_031 | 1/AA/924:928, 1/AA/1050:1057 | No text annotation | homologous IL_8CRE_030 NA | |
| IL_9BUP_032 | 1/AA/947:948, 1/AA/1014:1016 | Single bulged A | homologous IL_8CRE_031 NA | |
| IL_9BUP_033 | 1/AA/952:953, 1/AA/978:980 | No text annotation | homologous IL_8CRE_032 NA | |
| IL_9BUP_034 | 1/AA/953:957, 1/AA/974:978 | Triple sheared | homologous IL_8CRE_033 NA | |
| IL_9BUP_035 | 1/AA/988:991, 1/AA/1007:1009 | No text annotation | homologous IL_8CRE_034 NA | |
| IL_9BUP_036 | 1/AA/992:994, 1/AA/1005:1006 | No text annotation | homologous IL_8CRE_035 NA | |
| IL_9BUP_037 | 1/AA/1026:1028, 1/AA/1038:1042 | No text annotation | homologous IL_8CRE_036 NA | |
| IL_9BUP_038 | 1/AA/1088:1089, 1/AA/1239:1241 | Single stack bend | homologous IL_8CRE_038 NA | |
| IL_9BUP_039 | 1/AA/1095:1104, 1/AA/1228:1233 | No text annotation | ||
| IL_9BUP_040 | 1/AA/1105:1107, 1/AA/1226:1227 | Single bulged G | homologous IL_8P9A_265 IL_28408.2 | |
| IL_9BUP_041 | 1/AA/1113:1119, 1/AA/1175:1181 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_8P9A_266 IL_94128.1 | |
| IL_9BUP_042 | 1/AA/1119:1120, 1/AA/1173:1175 | Minor groove platform | homologous IL_8CRE_042 NA | |
| IL_9BUP_043 | 1/AA/1121:1126, 1/AA/1169:1172 | C-loop with bulged stacked A's | homologous IL_8CRE_043 NA | |
| IL_9BUP_044 | 1/AA/1128:1131, 1/AA/1164:1167 | Tandem non-canonical cWW pairs | homologous IL_8P9A_269 IL_71194.2 | |
| IL_9BUP_045 | 1/AA/1131:1133, 1/AA/1162:1164 | Isolated non-canonical cWW pair | homologous IL_8P9A_270 IL_01003.2 | |
| IL_9BUP_046 | 1/AA/1191:1193, 1/AA/1214:1216 | Isolated non-canonical cWW pair | homologous IL_8CRE_047 NA | |
| IL_9BUP_047 | 1/AA/1198:1200, 1/AA/1208:1209 | Single bulged A | homologous IL_8P9A_273 IL_14190.2 | |
| IL_9BUP_048 | 1/AA/1248:1250, 1/AA/1264:1266 | Isolated non-canonical cWW pair | homologous IL_8CRE_049 NA | |
| IL_9BUP_050 | 1/AA/1294:1299, 1/AA/1456:1461 | UAA/GAN with extra cWW | geometric IL_4WF9_104 IL_91079.1 | |
| IL_9BUP_051 | 1/AA/1301:1308, 1/AA/1453:1454 | SSU/LSU pseudoknot | homologous IL_8CRE_052 NA | |
| IL_9BUP_052 | 1/AA/1308:1310, 1/AA/1452:1453 | No text annotation | homologous IL_8CRE_053 NA | |
| IL_9BUP_053 | 1/AA/1315:1322, 1/AA/1442:1447 | No text annotation | homologous IL_8P9A_279 IL_39054.1 | |
| IL_9BUP_054 | 1/AA/1322:1333, 1/AA/1427:1442 | No text annotation | homologous IL_8CRE_055 NA | |
| IL_9BUP_055 | 1/AA/1335:1337, 1/AA/1424:1425 | Single bulged U | homologous IL_8P9A_281 IL_97561.2 | |
| IL_9BUP_056 | 1/AA/1525:1527, 1/AA/1577:1580 | No text annotation | homologous IL_8CRE_061 NA | |
| IL_9BUP_057 | 1/AA/1530:1534, 1/AA/1569:1574 | No text annotation | ||
| IL_9BUP_058 | 1/AA/1536:1543, 1/AA/1563:1567 | Kink-turn | homologous IL_8P9A_287 IL_90775.2 | |
| IL_9BUP_059 | 1/AA/1548:1550, 1/AA/1557:1558 | Single bulged U | geometric IL_8P9A_314 IL_97561.2 | |
| IL_9BUP_060 | 1/AA/1593:1599, 1/AA/2647:2652 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_8P9A_289 IL_02666.1 | |
| IL_9BUP_061 | 1/AA/1650:1654, 1/AA/1662:1664 | C-loop | homologous IL_8CRE_066 NA | |
| IL_9BUP_062 | 1/AA/1681:1685, 1/AA/1728:1733 | UAA/GAN | homologous IL_8P9A_291 IL_08938.1 | |
| IL_9BUP_063 | 1/AA/1759:1762, 1/AA/2090:2095 | No text annotation | ||
| IL_9BUP_064 | 1/AA/1768:1770, 1/AA/2082:2084 | Isolated non-canonical cWW pair | geometric IL_2O3Y_004 IL_71625.2 | |
| IL_9BUP_065 | 1/AA/1800:1804, 1/AA/2028:2032 | Triple sheared | homologous IL_8CRE_072 NA | |
| IL_9BUP_066 | 1/AA/1816:1818, 1/AA/2008:2010 | Isolated non-canonical cWW pair | homologous IL_8CRE_073 NA | |
| IL_9BUP_067 | 1/AA/1821:1823, 1/AA/2003:2005 | Isolated cWH basepair | geometric IL_8P9A_394 IL_10892.2 | |
| IL_9BUP_068 | 1/AA/1823:1824, 1/AA/2001:2003 | Major groove platform | geometric IL_9DFE_078 IL_48076.8 | |
| IL_9BUP_069 | 1/AA/1826:1829, 1/AA/1996:1999 | Tandem non-canonical cWW pairs | geometric IL_1MFQ_004 IL_15225.2 | |
| IL_9BUP_070 | 1/AA/1849:1853, 1/AA/1967:1972 | No text annotation | homologous IL_8CRE_076 NA | |
| IL_9BUP_071 | 1/AA/1861:1863, 1/AA/1895:1897 | Isolated non-canonical cWW pair | geometric IL_3RW6_004 IL_01003.2 | |
| IL_9BUP_072 | 1/AA/1868:1874, 1/AA/1884:1890 | No text annotation | homologous IL_8CRE_078 NA | |
| IL_9BUP_073 | 1/AA/1907:1910, 1/AA/1959:1962 | Tandem non-canonical cWW pairs | geometric IL_6MWN_005 IL_71194.2 | |
| IL_9BUP_074 | 1/AA/1976:1978, 1/AA/1990:1992 | Isolated non-canonical cWW pair | geometric IL_8CRE_391 IL_01003.2 | |
| IL_9BUP_076 | 1/AA/2151:2156, 1/AA/2640:2642 | No text annotation | geometric IL_4V9F_059 IL_12566.5 | |
| IL_9BUP_077 | 1/AA/2163:2165, 1/AA/2631:2633 | No text annotation | homologous IL_8CRE_080 NA | |
| IL_9BUP_078 | 1/AA/2166:2169, 1/AA/2629:2630 | Major groove platform; stack outside cWW | geometric IL_8P9A_304 IL_74641.2 | |
| IL_9BUP_079 | 1/AA/2166:2174, 1/AA/2626:2630 | No text annotation | geometric IL_8P9A_305 IL_80252.1 | |
| IL_9BUP_080 | 1/AA/2169:2174, 1/AA/2626:2629 | No text annotation | homologous IL_8P9A_306 IL_28217.1 | |
| IL_9BUP_081 | 1/AA/2186:2191, 1/AA/2196:2202 | No text annotation | homologous IL_8CRE_084 NA | |
| IL_9BUP_082 | 1/AA/2208:2210, 1/AA/2399:2401 | Isolated non-canonical cWW pair | homologous IL_8CRE_085 NA | |
| IL_9BUP_083 | 1/AA/2215:2216, 1/AA/2391:2394 | No text annotation | homologous IL_8CRE_086 NA | |
| IL_9BUP_084 | 1/AA/2421:2422, 1/AA/2616:2618 | Single bulged A | homologous IL_8P9A_310 IL_14190.2 | |
| IL_9BUP_085 | 1/AA/2449:2455, 1/AA/2466:2473 | No text annotation | homologous IL_8P9A_311 IL_14684.1 | |
| IL_9BUP_086 | 1/AA/2489:2492, 1/AA/2538:2539 | Minor groove platform, major groove intercalation | homologous IL_8CRE_089 NA | |
| IL_9BUP_087 | 1/AA/2493:2494, 1/AA/2534:2537 | No text annotation | homologous IL_8CRE_090 NA | |
| IL_9BUP_088 | 1/AA/2497:2503, 1/AA/2528:2531 | No text annotation | ||
| IL_9BUP_089 | 1/AA/2504:2509, 1/AA/2522:2527 | No text annotation | ||
| IL_9BUP_090 | 1/AA/2569:2570, 1/AA/2600:2603 | No text annotation | geometric IL_8CRE_094 NA | |
| IL_9BUP_091 | 1/AA/2570:2581, 1/AA/2597:2600 | No text annotation | homologous IL_8CRE_095 NA | |
| IL_9BUP_092 | 1/AA/2684:2687, 1/AA/3345:3347 | No text annotation | homologous IL_8P9A_319 IL_75527.2 | |
| IL_9BUP_093 | 1/AA/2689:2691, 1/AA/3340:3343 | No text annotation | homologous IL_8CRE_097 NA | |
| IL_9BUP_094 | 1/AA/2702:2704, 1/AA/3170:3171 | No text annotation | homologous IL_8CRE_098 NA | |
| IL_9BUP_095 | 1/AA/2705:2706, 1/AA/3166:3169 | Minor groove platform | homologous IL_8CRE_099 NA | |
| IL_9BUP_096 | 1/AA/2716:2718, 1/AA/2943:2946 | No text annotation | homologous IL_8CRE_100 NA | |
| IL_9BUP_099 | 1/AA/2953:2954, 1/AA/2964:2966 | Single bulged A | homologous IL_8P9A_325 IL_14190.2 | |
| IL_9BUP_100 | 1/AA/3005:3007, 1/AA/3025:3029 | No text annotation | homologous IL_8P9A_326 IL_14250.1 | |
| IL_9BUP_101 | 1/AA/3109:3113, 1/AA/3145:3147 | No text annotation | geometric IL_8CRE_417 IL_32983.2 | |
| IL_9BUP_102 | 1/AA/3115:3124, 1/AA/3136:3143 | No text annotation | ||
| IL_9BUP_103 | 1/AA/3182:3183, 1/AA/3224:3226 | Major groove platform | homologous IL_8P9A_329 IL_48076.8 | |
| IL_9BUP_104 | 1/AA/3183:3185, 1/AA/3222:3224 | Isolated non-canonical cWW pair | homologous IL_8P9A_330 IL_01003.2 | |
| IL_9BUP_105 | 1/AA/3185:3187, 1/AA/3221:3222 | No text annotation | homologous IL_8P9A_331 IL_46637.2 | |
| IL_9BUP_106 | 1/AA/3187:3189, 1/AA/3217:3221 | No text annotation | homologous IL_8CRE_113 NA | |
| IL_9BUP_107 | 1/AA/3194:3198, 1/AA/3208:3212 | Double sheared with non-canonical cWW | homologous IL_8CRE_114 NA | |
| IL_9BUP_108 | 1/AA/3235:3236, 1/AA/3308:3310 | No text annotation | homologous IL_8P9A_334 IL_46637.2 | |
| IL_9BUP_109 | 1/AA/3238:3240, 1/AA/3302:3306 | Isolated non-canonical cWW with bulges | homologous IL_8CRE_116 NA | |
| IL_9BUP_110 | 1/AA/3240:3241, 1/AA/3299:3302 | No text annotation | homologous IL_8CRE_117 NA | |
| IL_9BUP_111 | 1/AA/3250:3251, 1/AA/3268:3271 | No text annotation | homologous IL_8CRE_120 NA | |
| IL_9BUP_112 | 1/AA/3277:3279, 1/AA/3285:3287 | Isolated non-canonical cWW pair | homologous IL_8CRE_121 NA | |
| IL_9BUP_113 | 1/AA/3319:3320, 1/AA/3329:3331 | Single bulged A | geometric IL_1U9S_001 IL_14190.2 | |
| IL_9BUP_114 | 1/AA/3360:3363, 1/AA/3375:3379 | No text annotation | ||
| IL_9BUP_115 | 1/AA/3390:3393, 1/AA/3524:3530 | Double sheared | homologous IL_8CRE_123 NA | |
| IL_9BUP_116 | 1/AA/3398:3400, 1/AA/3426:3428 | Isolated non-canonical cWW pair | homologous IL_8P9A_343 IL_71625.2 | |
| IL_9BUP_117 | 1/AA/3405:3411, 1/AA/3416:3421 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_5J7L_346 NA | |
| IL_9BUP_118 | 1/AA/3433:3437, 1/AA/3476:3478 | No text annotation | homologous IL_8P9A_345 IL_06671.1 | |
| IL_9BUP_119 | 1/AA/3440:3444, 1/AA/3469:3473 | No text annotation | homologous IL_8CRE_127 NA | |
| IL_9BUP_120 | 1/AA/3448:3449, 1/AA/3462:3465 | No text annotation | homologous IL_8P9A_347 NA | |
| IL_9BUP_121 | 1/AA/3486:3491, 1/AA/3512:3517 | UAA/GAN with extra cWW | geometric IL_9DFE_106 IL_91079.1 | |
| IL_9BUP_122 | 1/AA/3580:3582, 1/AA/3620:3621 | Single bulged A | geometric IL_4R4V_004 IL_14190.2 | |
| IL_9BUP_123 | 1/AA/3583:3592, 1/AA/3612:3619 | No text annotation | ||
| IL_9BUP_124 | 1/AA/3629:3632, 1/AA/3653:3656 | Tandem non-canonical cWW pairs | geometric IL_8X5V_001 IL_71194.2 | |
| IL_9BUP_125 | 1/AA/3694:3697, 1/AA/3705:3708 | Tandem non-canonical cWW pairs | homologous IL_8CRE_135 NA | |
| IL_9BUP_126 | 1/AA/3714:3716, 1/AA/3775:3777 | Isolated non-canonical cWW pair | geometric IL_6E7L_001 IL_68118.2 | |
| IL_9BUP_127 | 1/AA/3716:3717, 1/AA/3773:3775 | Single bulged A | geometric IL_6WPI_001 IL_14190.2 | |
| IL_9BUP_128 | 1/AA/3720:3722, 1/AA/3765:3770 | No text annotation | homologous IL_8CRE_138 NA | |
| IL_9BUP_129 | 1/AA/3724:3729, 1/AA/3759:3763 | No text annotation | homologous IL_8CRE_139 NA | |
| IL_9BUP_130 | 1/AA/3731:3733, 1/AA/3756:3757 | Single bulged U | homologous IL_8P9A_361 IL_97561.2 | |
| IL_9BUP_131 | 1/AA/3734:3737, 1/AA/3752:3755 | Double sheared; A in syn | homologous IL_8P9A_362 IL_58355.2 | |
| IL_9BUP_132 | 1/AB/15:16, 1/AB/62:64 | Single bulged A | homologous IL_8OI5_134 IL_14190.2 | |
| IL_9BUP_133 | 1/AB/21:27, 1/AB/52:57 | No text annotation | geometric IL_9E6Q_106 IL_41504.1 | |
| IL_9BUP_134 | 1/AB/28:29, 1/AB/48:51 | No text annotation | homologous IL_9DFE_112 IL_73108.2 | |
| IL_9BUP_135 | 1/AB/32:36, 1/AB/41:45 | Symmetric double minor groove platform | homologous IL_4V9F_104 IL_58103.12 | |
| IL_9BUP_136 | 1/AB/71:78, 1/AB/98:104 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8OI5_139 IL_62167.2 | |
| IL_9BUP_137 | 1/AB/82:85, 1/AB/92:94 | Isolated cWH basepair | geometric IL_3W3S_003 IL_10892.2 | |
| IL_9BUP_138 | 1/AC/68:70, 1/AC/96:99 | Isolated non-canonical cWW with bulges | homologous IL_8P9A_371 IL_76400.1 | |
| IL_9BUP_139 | 1/AC/122:123, 1/AC/138:141 | No text annotation | ||
| IL_9BUP_142 | 1/S7/47:50, 1/S7/60:64 | No text annotation | geometric IL_8CRE_009 NA | |
| IL_9BUP_143 | 1/SA/24:26, 1/SA/607:608 | Single bulged C | homologous IL_8P9A_373 IL_05642.2 | |
| IL_9BUP_144 | 1/SA/37:41, 1/SA/472:477 | No text annotation | homologous IL_8CRE_392 IL_12697.1 | |
| IL_9BUP_145 | 1/SA/42:48, 1/SA/437:439 | No text annotation | geometric IL_8P9A_376 IL_88082.2 | |
| IL_9BUP_146 | 1/SA/50:52, 1/SA/434:435 | Minor groove platform | homologous IL_8CRE_394 IL_34520.2 | |
| IL_9BUP_147 | 1/SA/58:63, 1/SA/89:91 | No text annotation | ||
| IL_9BUP_148 | 1/SA/64:68, 1/SA/84:88 | No text annotation | homologous IL_8P9A_379 IL_21667.2 | |
| IL_9BUP_149 | 1/SA/111:114, 1/SA/308:311 | Tandem non-canonical cWW pairs | homologous IL_8P9A_380 IL_71194.2 | |
| IL_9BUP_150 | 1/SA/115:118, 1/SA/306:307 | No text annotation | homologous IL_8CRE_398 IL_71421.2 | |
| IL_9BUP_151 | 1/SA/119:123, 1/SA/302:305 | UAA/GAN related | geometric IL_3LOA_001 IL_60988.2 | |
| IL_9BUP_152 | 1/SA/141:147, 1/SA/163:170 | No text annotation | homologous IL_8CRE_400 IL_24485.1 | |
| IL_9BUP_154 | 1/SA/266:268, 1/SA/294:295 | Single bulged A | homologous IL_8P9A_388 IL_14190.2 | |
| IL_9BUP_155 | 1/SA/317:322, 1/SA/354:361 | Kink-turn with non-sequential stacking | homologous IL_8CRE_408 IL_46174.4 | |
| IL_9BUP_156 | 1/SA/324:329, 1/SA/351:352 | No text annotation | homologous IL_8P9A_392 IL_01372.1 | |
| IL_9BUP_157 | 1/SA/369:371, 1/SA/382:387 | No text annotation | homologous IL_8P9A_393 IL_93336.1 | |
| IL_9BUP_158 | 1/SA/395:397, 1/SA/412:414 | Isolated cWH basepair | homologous IL_8CRE_411 IL_10892.2 | |
| IL_9BUP_159 | 1/SA/417:419, 1/SA/426:428 | No text annotation | homologous IL_8CRE_412 IL_42997.5 | |
| IL_9BUP_160 | 1/SA/445:447, 1/SA/469:470 | No text annotation | homologous IL_8CRE_413 IL_97561.2 | |
| IL_9BUP_161 | 1/SA/449:453, 1/SA/466:467 | C-loop | homologous IL_8P9A_397 IL_26900.1 | |
| IL_9BUP_162 | 1/SA/453:454, 1/SA/464:466 | Single bulged G | homologous IL_8P9A_398 IL_28408.2 | |
| IL_9BUP_163 | 1/SA/521:523, 1/SA/543:550 | No text annotation | homologous IL_8CRE_418 IL_02511.1 | |
| IL_9BUP_164 | 1/SA/557:564, 1/SA/594:595 | SSU/LSU pseudoknot | homologous IL_8CRE_421 IL_11411.1 | |
| IL_9BUP_165 | 1/SA/564:566, 1/SA/593:594 | No text annotation | homologous IL_8CRE_422 IL_97561.2 | |
| IL_9BUP_166 | 1/SA/569:575, 1/SA/582:590 | No text annotation | homologous IL_8P9A_404 IL_52042.1 | |
| IL_9BUP_167 | 1/SA/623:629, 1/SA/1205:1206 | No text annotation | homologous IL_8CRE_424 IL_20847.1 | |
| IL_9BUP_168 | 1/SA/631:633, 1/SA/1042:1044 | Isolated non-canonical cWW pair | homologous IL_8CRE_425 IL_01003.2 | |
| IL_9BUP_169 | 1/SA/634:638, 1/SA/1037:1041 | tSH-tHW-tHS | homologous IL_8CRE_426 IL_05821.1 | |
| IL_9BUP_170 | 1/SA/650:653, 1/SA/747:750 | Tandem non-canonical cWW pairs | geometric IL_5EW4_002 IL_15225.2 | |
| IL_9BUP_171 | 1/SA/796:797, 1/SA/865:868 | Minor groove platform | geometric IL_9DFE_073 IL_24264.1 | |
| IL_9BUP_172 | 1/SA/798:800, 1/SA/862:864 | Isolated non-canonical cWW pair | homologous IL_8P9A_413 IL_71625.2 | |
| IL_9BUP_173 | 1/SA/801:809, 1/SA/854:861 | No text annotation | homologous IL_8P9A_414 IL_59049.2 | |
| IL_9BUP_174 | 1/SA/827:835, 1/SA/845:846 | No text annotation | ||
| IL_9BUP_175 | 1/SA/878:879, 1/SA/923:925 | No text annotation | ||
| IL_9BUP_176 | 1/SA/881:883, 1/SA/919:921 | Isolated non-canonical cWW pair | homologous IL_8P9A_415 IL_71625.2 | |
| IL_9BUP_178 | 1/SA/933:934, 1/SA/1031:1034 | Major groove platform; stack outside cWW | geometric IL_8P9A_417 IL_74641.2 | |
| IL_9BUP_179 | 1/SA/936:937, 1/SA/1027:1029 | Single bulged U | geometric IL_8P9A_281 IL_97561.2 | |
| IL_9BUP_180 | 1/SA/939:942, 1/SA/1023:1025 | Isolated non-canonical cWW pair | geometric IL_8P9A_296 IL_01003.2 | |
| IL_9BUP_181 | 1/SA/943:946, 1/SA/1020:1022 | Isolated non-canonical cWW pair | geometric IL_5T3K_001 IL_01003.2 | |
| IL_9BUP_182 | 1/SA/954:957, 1/SA/993:996 | Tandem non-canonical cWW pairs | homologous IL_8P9A_421 IL_15225.2 | |
| IL_9BUP_183 | 1/SA/962:968, 1/SA/979:988 | No text annotation | homologous IL_8P9A_422 IL_57741.1 | |
| IL_9BUP_184 | 1/SA/1054:1058, 1/SA/1084:1085 | Left turn | geometric IL_4LFB_032 IL_29346.3 | |
| IL_9BUP_185 | 1/SA/1059:1063, 1/SA/1079:1083 | tSH-tHW-tHS | homologous IL_8CRE_438 IL_05821.1 | |
| IL_9BUP_186 | 1/SA/1103:1105, 1/SA/1196:1202 | No text annotation | homologous IL_8P9A_425 IL_82706.2 | |
| IL_9BUP_187 | 1/SA/1117:1119, 1/SA/1169:1171 | Isolated non-canonical cWW pair | geometric IL_3TD0_001 NA | |
| IL_9BUP_188 | 1/SA/1212:1219, 1/SA/1230:1235 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_8CRE_442 IL_84044.1 | |
| IL_9BUP_189 | 1/SA/1247:1248, 1/SA/1927:1929 | Single bulged A | homologous IL_8CRE_443 IL_14190.2 | |
| IL_9BUP_190 | 1/SA/1250:1252, 1/SA/1924:1925 | No text annotation | homologous IL_8CRE_444 IL_28408.2 | |
| IL_9BUP_191 | 1/SA/1258:1261, 1/SA/1914:1918 | C-loop | homologous IL_8CRE_445 IL_63596.12 | |
| IL_9BUP_192 | 1/SA/1266:1268, 1/SA/1875:1878 | No text annotation | geometric IL_4QIK_001 IL_32983.2 | |
| IL_9BUP_193 | 1/SA/1274:1276, 1/SA/1710:1712 | Isolated non-canonical cWW pair | homologous IL_8P9A_432 IL_01003.2 | |
| IL_9BUP_195 | 1/SA/1369:1371, 1/SA/1686:1687 | Single bulged U | homologous IL_8P9A_437 IL_97561.2 | |
| IL_9BUP_196 | 1/SA/1373:1377, 1/SA/1682:1684 | No text annotation | geometric IL_8CRE_452 IL_82453.1 | |
| IL_9BUP_197 | 1/SA/1373:1379, 1/SA/1676:1684 | No text annotation | geometric IL_8P9A_439 IL_99893.1 | |
| IL_9BUP_198 | 1/SA/1377:1379, 1/SA/1676:1682 | No text annotation | homologous IL_8P9A_440 IL_34117.1 | |
| IL_9BUP_199 | 1/SA/1381:1382, 1/SA/1672:1674 | Single bulged A | homologous IL_8CRE_455 IL_14190.2 | |
| IL_9BUP_200 | 1/SA/1408:1410, 1/SA/1419:1420 | Minor groove platform | homologous IL_8P9A_443 IL_34520.2 | |
| IL_9BUP_209 | 1/SA/1933:1935, 1/SA/2056:2059 | No text annotation | homologous IL_8P9A_452 IL_18228.1 | |
| IL_9BUP_210 | 1/SA/1935:1938, 1/SA/2052:2056 | No text annotation | homologous IL_8P9A_453 IL_25873.2 | |
| IL_9BUP_211 | 1/SA/1939:1941, 1/SA/2049:2051 | Isolated non-canonical cWW pair | homologous IL_8P9A_454 IL_01003.2 | |
| IL_9BUP_212 | 1/SA/1941:1943, 1/SA/2046:2049 | No text annotation | geometric IL_4LFB_070 IL_29925.2 | |
| IL_9BUP_213 | 1/SA/1947:1949, 1/SA/2040:2042 | Isolated non-canonical cWW pair | homologous IL_8CRE_470 IL_01003.2 | |
| IL_9BUP_214 | 1/SA/1950:1953, 1/SA/2036:2039 | Double sheared | homologous IL_8P9A_457 IL_58355.2 | |
| IL_9BUP_215 | 1/SA/1953:1955, 1/SA/2035:2036 | No text annotation | homologous IL_8CRE_472 IL_97561.2 | |
| IL_9BUP_216 | 1/SA/1962:1964, 1/SA/2026:2028 | Isolated non-canonical cWW pair | homologous IL_8CRE_473 IL_71625.2 | |
| IL_9BUP_217 | 1/SA/1966:1969, 1/SA/2021:2024 | Double sheared | homologous IL_8CRE_474 IL_58355.2 | |
| IL_9BUP_218 | 1/SA/1970:1972, 1/SA/2018:2020 | Isolated non-canonical cWW pair | homologous IL_8P9A_461 IL_01003.2 | |
| IL_9BUP_219 | 1/SA/1975:1979, 1/SA/2011:2015 | Triple sheared | homologous IL_8CRE_476 IL_15190.2 | |
| IL_9BUP_220 | 1/SA/1979:1982, 1/SA/2008:2011 | Tandem non-canonical cWW pairs | geometric IL_1JID_002 IL_15225.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9BUP_014 | Isolated cWH basepair | ||
| IL_9BUP_049 | No text annotation | ||
| IL_9BUP_075 | No text annotation | ||
| IL_9BUP_097 | Major groove platform | ||
| IL_9BUP_098 | Tandem non-canonical cWW pairs | ||
| IL_9BUP_140 | No text annotation | ||
| IL_9BUP_141 | Single stack bend | ||
| IL_9BUP_153 | No text annotation | ||
| IL_9BUP_177 | Triple non-canonical cWW pairs | ||
| IL_9BUP_194 | Minor groove platform | ||
| IL_9BUP_201 | No text annotation | ||
| IL_9BUP_202 | No text annotation | ||
| IL_9BUP_203 | No text annotation | ||
| IL_9BUP_204 | No text annotation | ||
| IL_9BUP_205 | Tandem non-canonical cWW pairs | ||
| IL_9BUP_206 | No text annotation | ||
| IL_9BUP_207 | Single stack bend | ||
| IL_9BUP_208 | Single stack bend | ||
| IL_9BUP_221 | Single stack bend |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9BUP_001 | 1/AA/113:117, 1/AA/160:163, 1/AA/268:274 | No text annotation | ||
| J3_9BUP_002 | 1/AA/193:197, 1/AA/213:222, 1/AA/234:238 | No text annotation | geometric J3_9DFE_006 J3_77124.1 | |
| J3_9BUP_003 | 1/AA/348:364, 1/AA/371:376, 1/AC/25:28 | No text annotation | homologous J3_8P9A_045 J3_07616.1 | |
| J3_9BUP_004 | 1/AA/377:385, 1/AA/413:414, 1/AC/23:24 | No text annotation | homologous J3_8CRE_005 NA | |
| J3_9BUP_005 | 1/AA/377:388, 1/AA/399:414, 1/AC/23:24 | No text annotation | ||
| J3_9BUP_006 | 1/AA/446:454, 1/AA/501:506, 1/AA/692:701 | No text annotation | ||
| J3_9BUP_007 | 1/AA/512:514, 1/AA/641:653, 1/AA/680:686 | No text annotation | ||
| J3_9BUP_008 | 1/AA/540:548, 1/AA/580:582, 1/AA/608:612 | No text annotation | ||
| J3_9BUP_009 | 1/AA/933:939, 1/AA/1024:1026, 1/AA/1042:1045 | No text annotation | homologous J3_8CRE_009 NA | |
| J3_9BUP_010 | 1/AA/948:950, 1/AA/982:987, 1/AA/1010:1014 | No text annotation | ||
| J3_9BUP_011 | 1/AA/1108:1109, 1/AA/1185:1189, 1/AA/1218:1225 | No text annotation | ||
| J3_9BUP_012 | 1/AA/1628:1634, 1/AA/2124:2126, 1/AA/2138:2141 | No text annotation | homologous J3_8P9A_053 J3_05025.1 | |
| J3_9BUP_013 | 1/AA/1637:1640, 1/AA/2104:2110, 1/AA/2119:2121 | No text annotation | homologous J3_8CRE_014 NA | |
| J3_9BUP_014 | 1/AA/1675:1680, 1/AA/1734:1738, 1/AA/1755:1756 | No text annotation | homologous J3_8P9A_055 J3_94309.1 | |
| J3_9BUP_015 | 1/AA/1780:1781, 1/AA/1790:1800, 1/AA/2032:2033 | No text annotation | ||
| J3_9BUP_016 | 1/AA/1809:1813, 1/AA/2013:2014, 1/AA/2018:2023 | No text annotation | homologous J3_8CRE_018 NA | |
| J3_9BUP_017 | 1/AA/1854:1860, 1/AA/1898:1905, 1/AA/1964:1966 | No text annotation | ||
| J3_9BUP_018 | 1/AA/2725:2728, 1/AA/2821:2825, 1/AA/2930:2936 | No text annotation | geometric J3_4V9F_007 J3_86017.1 | |
| J3_9BUP_019 | 1/AA/2990:2992, 1/AA/3093:3104, 1/AA/3152:3157 | No text annotation | homologous J3_8P9A_061 J3_04772.1 | |
| J3_9BUP_020 | 1/AA/3003:3005, 1/AA/3029:3031, 1/AA/3040:3045 | No text annotation | homologous J3_8P9A_062 J3_05327.1 | |
| J3_9BUP_021 | 1/AA/3245:3248, 1/AA/3273:3275, 1/AA/3289:3295 | No text annotation | homologous J3_8CRE_023 NA | |
| J3_9BUP_022 | 1/AA/3575:3580, 1/AA/3621:3627, 1/AA/3658:3672 | No text annotation | ||
| J3_9BUP_023 | 1/AA/3691:3693, 1/AA/3709:3712, 1/AA/3779:3783 | No text annotation | ||
| J3_9BUP_024 | 1/AB/9:14, 1/AB/65:66, 1/AB/109:110 | No text annotation | homologous J3_8P9A_066 J3_26985.1 | |
| J3_9BUP_025 | 1/AC/48:49, 1/AC/62:68, 1/AC/99:103 | No text annotation | homologous J3_8P9A_067 J3_01004.1 | |
| J3_9BUP_026 | 1/SA/41:42, 1/SA/439:445, 1/SA/470:472 | No text annotation | geometric J3_8CRE_071 J3_58657.1 | |
| J3_9BUP_027 | 1/SA/41:48, 1/SA/437:445, 1/SA/470:472 | No text annotation | homologous J3_8CRE_072 J3_63856.1 | |
| J3_9BUP_028 | 1/SA/640:642, 1/SA/929:933, 1/SA/1034:1035 | No text annotation | geometric J3_8P9A_071 J3_01633.1 | |
| J3_9BUP_029 | 1/SA/640:642, 1/SA/929:934, 1/SA/1031:1035 | No text annotation | homologous J3_8P9A_072 J3_17385.5 | |
| J3_9BUP_030 | 1/SA/810:813, 1/SA/823:825, 1/SA/848:853 | No text annotation | homologous J3_8P9A_073 J3_97642.2 | |
| J3_9BUP_031 | 1/SA/950:953, 1/SA/997:1005, 1/SA/1012:1016 | No text annotation | homologous J3_8P9A_074 J3_23895.1 | |
| J3_9BUP_032 | 1/SA/1106:1108, 1/SA/1180:1184, 1/SA/1191:1195 | No text annotation | ||
| J3_9BUP_033 | 1/SA/1262:1266, 1/SA/1878:1884, 1/SA/1906:1913 | No text annotation | ||
| J3_9BUP_034 | 1/SA/1269:1272, 1/SA/1714:1716, 1/SA/1871:1874 | No text annotation | homologous J3_8CRE_079 J3_44359.1 | |
| J3_9BUP_035 | 1/SA/1281:1288, 1/SA/1299:1310, 1/SA/1700:1704 | No text annotation | homologous J3_8CRE_080 J3_88451.1 | |
| J3_9BUP_036 | 1/SA/1316:1321, 1/SA/1364:1368, 1/SA/1688:1694 | No text annotation | homologous J3_8CRE_081 J3_87797.2 | |
| J3_9BUP_037 | 1/SA/1384:1389, 1/SA/1429:1435, 1/SA/1664:1670 | No text annotation | geometric J3_4LFB_007 J3_01343.1 | |
| J3_9BUP_038 | 1/SA/1394:1395, 1/SA/1405:1408, 1/SA/1420:1424 | No text annotation | homologous J3_8CRE_083 J3_76043.4 | |
| J3_9BUP_039 | 1/SA/1438:1440, 1/SA/1632:1635, 1/SA/1658:1661 | No text annotation | geometric J3_8CRE_084 J3_82365.5 | |
| J3_9BUP_040 | 1/SA/1438:1440, 1/SA/1632:1637, 1/SA/1653:1661 | No text annotation | homologous J3_8CRE_085 J3_88233.1 | |
| J4_9BUP_001 | 1/AA/112:113, 1/AA/274:279, 1/AA/300:307, 1/AA/324:327 | No text annotation | homologous J4_8P9A_012 J4_94698.1 | |
| J4_9BUP_002 | 1/AA/193:197, 1/AA/213:216, 1/AA/220:222, 1/AA/234:238 | No text annotation | ||
| J4_9BUP_003 | 1/AA/1600:1606, 1/AA/1624:1625, 1/AA/2144:2148, 1/AA/2645:2646 | No text annotation | homologous J4_8CRE_003 NA | |
| J4_9BUP_004 | 1/AA/1641:1645, 1/AA/1669:1674, 1/AA/1757:1758, 1/AA/2096:2103 | No text annotation | homologous J4_8P9A_015 J4_47264.1 | |
| J4_9BUP_005 | 1/AA/1829:1830, 1/AA/1848:1849, 1/AA/1972:1976, 1/AA/1992:1996 | No text annotation | ||
| J4_9BUP_006 | 1/AA/2423:2427, 1/AA/2439:2443, 1/AA/2479:2483, 1/AA/2610:2615 | No text annotation | homologous J4_8CRE_006 NA | |
| J4_9BUP_007 | 1/AA/2485:2487, 1/AA/2541:2542, 1/AA/2560:2569, 1/AA/2603:2608 | No text annotation | homologous J4_8CRE_007 NA | |
| J4_9BUP_008 | 1/AA/2993:2997, 1/AA/3051:3055, 1/AA/3079:3081, 1/AA/3090:3092 | No text annotation | homologous J4_8CRE_008 NA | |
| J4_9BUP_009 | 1/AA/3396:3398, 1/AA/3428:3429, 1/AA/3482:3484, 1/AA/3519:3521 | No text annotation | homologous J4_8CRE_009 NA | |
| J4_9BUP_010 | 1/S7/4:10, 1/S7/24:25, 1/S7/42:47, 1/S7/64:67 | No text annotation | ||
| J4_9BUP_011 | 1/S8/7:10, 1/S8/25:27, 1/S8/43:49, 1/S8/65:66 | tRNA junction | homologous J4_1IL2_001 J4_95067.1 | |
| J4_9BUP_012 | 1/S9/7:10, 1/S9/25:28, 1/S9/42:49, 1/S9/65:66 | tRNA junction | homologous J4_5WWT_001 J4_65285.1 | |
| J4_9BUP_013 | 1/SA/101:109, 1/SA/313:315, 1/SA/363:367, 1/SA/389:390 | No text annotation | homologous J4_8P9A_021 J4_15241.2 | |
| J4_9BUP_014 | 1/SA/629:631, 1/SA/1044:1049, 1/SA/1090:1101, 1/SA/1204:1205 | No text annotation | homologous J4_8CRE_022 J4_14595.1 | |
| J5_9BUP_001 | 1/AA/20:22, 1/AC/39:46, 1/AC/105:110, 1/AC/118:119, 1/AC/144:146 | No text annotation | homologous J5_8P9A_010 J5_27223.1 | |
| J5_9BUP_002 | 1/AA/736:741, 1/AA/918:921, 1/AA/1060:1063, 1/AA/1524:1525, 1/AA/1580:1586 | No text annotation | homologous J5_8P9A_011 J5_08384.1 | |
| J5_9BUP_003 | 1/AA/2174:2182, 1/AA/2206:2207, 1/AA/2402:2403, 1/AA/2407:2415, 1/AA/2624:2626 | No text annotation | homologous J5_8CRE_004 NA | |
| J5_9BUP_004 | 1/AA/2692:2699, 1/AA/3174:3182, 1/AA/3226:3235, 1/AA/3310:3316, 1/AA/3334:3339 | No text annotation | ||
| J5_9BUP_005 | 1/AA/2709:2712, 1/AA/2950:2953, 1/AA/2966:2967, 1/AA/2989:2990, 1/AA/3157:3163 | No text annotation | homologous J5_8P9A_015 J5_96125.1 | |
| J5_9BUP_006 | 1/SA/31:35, 1/SA/479:485, 1/SA/516:521, 1/SA/550:553, 1/SA/599:602 | No text annotation | homologous J5_8CRE_018 J5_04786.1 | |
| J5_9BUP_007 | 1/SA/31:35, 1/SA/479:485, 1/SA/516:523, 1/SA/543:553, 1/SA/599:602 | No text annotation | ||
| J5_9BUP_008 | 1/SA/54:57, 1/SA/92:99, 1/SA/392:394, 1/SA/415:417, 1/SA/428:432 | No text annotation | homologous J5_8CRE_020 J5_58574.1 | |
| J5_9BUP_009 | 1/SA/643:648, 1/SA/752:755, 1/SA/792:793, 1/SA/871:877, 1/SA/926:928 | No text annotation | ||
| J6_9BUP_001 | 1/AA/23:28, 1/AA/56:68, 1/AA/75:79, 1/AA/106:110, 1/AA/329:338, 1/AC/37:38 | No text annotation | ||
| J6_9BUP_002 | 1/AA/2709:2712, 1/AA/2950:2953, 1/AA/2966:2967, 1/AA/2989:2992, 1/AA/3093:3104, 1/AA/3152:3163 | No text annotation | ||
| J7_9BUP_001 | 1/AA/1068:1074, 1/AA/1085:1087, 1/AA/1242:1245, 1/AA/1269:1274, 1/AA/1285:1289, 1/AA/1466:1467, 1/AA/1514:1519 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_9BUP_041 | No text annotation |
Coloring options: