HL_9BUP_012

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCACUAAUGU

Length

10 nucleotides

Bulged bases

9BUP|1|AA|C|592, 9BUP|1|AA|U|595, 9BUP|1|AA|U|598

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BUP|1|AA|G|591
9BUP|1|AA|C|592
9BUP|1|AA|A|593
9BUP|1|AA|C|594
9BUP|1|AA|U|595
9BUP|1|AA|A|596
9BUP|1|AA|A|597
9BUP|1|AA|U|598
9BUP|1|AA|G|599
9BUP|1|AA|U|600

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AH

60S ribosomal protein L6

Chain AN

60S ribosomal protein L14

Chain AU

60S ribosomal protein L18a