HL_9BUP_015

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

9BUP|1|AA|C|726

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BUP_015 not in the Motif Atlas

Homologous match to HL_8CRE_013

Geometric discrepancy: 0.0685

The information below is about HL_8CRE_013

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

9BUP|1|AA|U|718
9BUP|1|AA|C|719
9BUP|1|AA|U|720
9BUP|1|AA|U|721
9BUP|1|AA|G|722
9BUP|1|AA|A|723
9BUP|1|AA|A|724
9BUP|1|AA|A|725
9BUP|1|AA|C|726
9BUP|1|AA|A|727

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A8

60S ribosomal protein L32

Chain AE

60S ribosomal protein L3

Chain AO

60S ribosomal protein L27a