HL_9BUP_026
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AUGAGAACU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BUP_026 not in the Motif Atlas
- Homologous match to HL_8CRE_030
- Geometric discrepancy: 0.1271
- The information below is about HL_8CRE_030
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
9BUP|1|AA|A|1611
9BUP|1|AA|U|1612
9BUP|1|AA|G|1613
9BUP|1|AA|A|1614
9BUP|1|AA|G|1615
9BUP|1|AA|A|1616
9BUP|1|AA|A|1617
9BUP|1|AA|C|1618
9BUP|1|AA|U|1619
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain A7
- 60S ribosomal protein L31
- Chain AT
- 60S ribosomal protein L19
- Chain AW
- 60S ribosomal protein L17
Coloring options: