HL_9BUP_036

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

9BUP|1|AA|U|2193

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BUP_036 not in the Motif Atlas

Homologous match to HL_8CRE_042

Geometric discrepancy: 0.0581

The information below is about HL_8CRE_042

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

9BUP|1|AA|C|2191
9BUP|1|AA|U|2192
9BUP|1|AA|U|2193
9BUP|1|AA|C|2194
9BUP|1|AA|G|2195
9BUP|1|AA|G|2196

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain Ag

60S ribosomal protein L41

Chain Ah

Large ribosomal subunit protein eL43

Chain SA

Small subunit ribosomal RNA; SSU rRNA