HL_9BUP_037

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAAAC

Length

5 nucleotides

Bulged bases

9BUP|1|AA|A|2404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BUP_037 not in the Motif Atlas

Homologous match to HL_8CRE_043

Geometric discrepancy: 0.1947

The information below is about HL_8CRE_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78677.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

9BUP|1|AA|G|2403
9BUP|1|AA|A|2404
9BUP|1|AA|A|2405
9BUP|1|AA|A|2406
9BUP|1|AA|C|2407

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A0

60S ribosomal protein L24

Chain AT

60S ribosomal protein L19

Chain SA

Small subunit ribosomal RNA; SSU rRNA