HL_9BUP_043

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

9BUP|1|AA|A|2665, 9BUP|1|AA|A|2666, 9BUP|1|AA|C|2667

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BUP_043 not in the Motif Atlas

Homologous match to HL_8P9A_162

Geometric discrepancy: 0.0531

The information below is about HL_8P9A_162

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

9BUP|1|AA|G|2662
9BUP|1|AA|G|2663
9BUP|1|AA|G|2664
9BUP|1|AA|A|2665
9BUP|1|AA|A|2666
9BUP|1|AA|C|2667
9BUP|1|AA|G|2668
9BUP|1|AA|G|2669
9BUP|1|AA|G|2670
9BUP|1|AA|C|2671

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A8

60S ribosomal protein L32

Chain AE

60S ribosomal protein L3