HL_9BUP_044

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

9BUP|1|AA|G|2957

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BUP_044 not in the Motif Atlas

Homologous match to HL_8P9A_165

Geometric discrepancy: 0.0747

The information below is about HL_8P9A_165

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

9BUP|1|AA|C|2955
9BUP|1|AA|U|2956
9BUP|1|AA|G|2957
9BUP|1|AA|G|2958
9BUP|1|AA|G|2959
9BUP|1|AA|G|2960
9BUP|1|AA|C|2961
9BUP|1|AA|G|2962
9BUP|1|AA|G|2963

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A4

60S ribosomal protein L29

Chain AQ

60S ribosomal protein L10

Chain S8

Transfer RNA; tRNA