HL_9BUP_047

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UAAAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BUP_047 not in the Motif Atlas

Homologous match to HL_8P9A_168

Geometric discrepancy: 0.1004

The information below is about HL_8P9A_168

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

29

Unit IDs

9BUP|1|AA|U|3032
9BUP|1|AA|A|3033
9BUP|1|AA|A|3034
9BUP|1|AA|A|3035
9BUP|1|AA|A|3036
9BUP|1|AA|G|3037
9BUP|1|AA|G|3038
9BUP|1|AA|G|3039

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AQ

60S ribosomal protein L10

Chain AV

60S ribosomal protein L21

Chain S8

Transfer RNA; tRNA