HL_9BUP_049

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BUP_049 not in the Motif Atlas

Homologous match to HL_8P9A_170

Geometric discrepancy: 0.0901

The information below is about HL_8P9A_170

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9BUP|1|AA|U|3083
9BUP|1|AA|G|3084
9BUP|1|AA|A|3085
9BUP|1|AA|A|3086
9BUP|1|AA|A|3087
9BUP|1|AA|G|3088

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AR

60S ribosomal protein L5

Chain AV

60S ribosomal protein L21

Chain Ai

Large ribosomal subunit protein eL42