HL_9BUP_056

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGACAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BUP_056 not in the Motif Atlas

Homologous match to HL_8CRE_065

Geometric discrepancy: 0.1481

The information below is about HL_8CRE_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_65794.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

14

Unit IDs

9BUP|1|AA|U|3453
9BUP|1|AA|G|3454
9BUP|1|AA|A|3455
9BUP|1|AA|C|3456
9BUP|1|AA|A|3457
9BUP|1|AA|A|3458

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A7

60S ribosomal protein L31

Chain AT

60S ribosomal protein L19

Chain AX

60S ribosomal protein L22