HL_9BUP_057

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUGAACGCCUCUUAAG

Length

16 nucleotides

Bulged bases

9BUP|1|AA|G|3500, 9BUP|1|AA|C|3504, 9BUP|1|AA|U|3506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BUP_057 not in the Motif Atlas

Homologous match to HL_8CRE_066

Geometric discrepancy: 0.1274

The information below is about HL_8CRE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

9BUP|1|AA|C|3494
9BUP|1|AA|U|3495
9BUP|1|AA|G|3496
9BUP|1|AA|A|3497
9BUP|1|AA|A|3498
9BUP|1|AA|C|3499
9BUP|1|AA|G|3500
9BUP|1|AA|C|3501
9BUP|1|AA|C|3502
9BUP|1|AA|U|3503
9BUP|1|AA|C|3504
9BUP|1|AA|U|3505
9BUP|1|AA|U|3506
9BUP|1|AA|A|3507
9BUP|1|AA|A|3508
9BUP|1|AA|G|3509

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AH

60S ribosomal protein L6

Chain AK

60S ribosomal protein L13

Chain Af

Ubiquitin-60S ribosomal protein L40