HL_9BUP_061
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GGAGAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BUP_061 not in the Motif Atlas
- Homologous match to HL_8OI5_070
- Geometric discrepancy: 0.0955
- The information below is about HL_8OI5_070
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_34789.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 397
Unit IDs
9BUP|1|AB|G|86
9BUP|1|AB|G|87
9BUP|1|AB|A|88
9BUP|1|AB|G|89
9BUP|1|AB|A|90
9BUP|1|AB|C|91
Current chains
- Chain AB
- 5S ribosomal RNA
Nearby chains
- Chain A5
- 60S ribosomal protein L7
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain AQ
- 60S ribosomal protein L10
- Chain AU
- 60S ribosomal protein L18a
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