HL_9BUP_062
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CAGCAAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BUP_062 not in the Motif Atlas
- Homologous match to HL_8CRE_074
- Geometric discrepancy: 0.2379
- The information below is about HL_8CRE_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_93438.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
9BUP|1|AC|C|51
9BUP|1|AC|A|52
9BUP|1|AC|G|53
9BUP|1|AC|C|54
9BUP|1|AC|A|55
9BUP|1|AC|A|56
9BUP|1|AC|A|57
9BUP|1|AC|A|58
9BUP|1|AC|U|59
9BUP|1|AC|G|60
Current chains
- Chain AC
- 5.8S ribosomal RNA
Nearby chains
- Chain A3
- 60S ribosomal protein L35
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain AY
- 60S ribosomal protein L23
- Chain Ac
- Ribosomal protein L37
- Chain Ae
- 60S ribosomal protein L39
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