HL_9BUP_063

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUGCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BUP_063 not in the Motif Atlas

Geometric match to HL_6JDV_001

Geometric discrepancy: 0.2332

The information below is about HL_6JDV_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

9BUP|1|AC|U|77
9BUP|1|AC|U|78
9BUP|1|AC|G|79
9BUP|1|AC|C|80
9BUP|1|AC|A|81
9BUP|1|AC|G|82

Current chains

Chain AC

5.8S ribosomal RNA

Nearby chains

Chain A3

60S ribosomal protein L35

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain AZ

60S ribosomal protein L26

Chain Ae

60S ribosomal protein L39