HL_9BUP_065

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AGUUGGUU

Length

8 nucleotides

Bulged bases

9BUP|1|S7|U|16, 9BUP|1|S7|U|17, 9BUP|1|S7|G|18, 9BUP|1|S7|G|19

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BUP_065 not in the Motif Atlas

Homologous match to HL_7U2I_103

Geometric discrepancy: 0.5946

The information below is about HL_7U2I_103

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BUP|1|S7|A|14
9BUP|1|S7|G|15
9BUP|1|S7|U|16
9BUP|1|S7|U|17
9BUP|1|S7|G|18
9BUP|1|S7|G|19
9BUP|1|S7|U|20
9BUP|1|S7|U|21

Current chains

Chain S7

tRNA

Nearby chains