HL_9BUP_066
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GCGGGUCUCAUAAUC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9BUP|1|S7|G|27
9BUP|1|S7|C|28
9BUP|1|S7|G|29
9BUP|1|S7|G|30
9BUP|1|S7|G|31
9BUP|1|S7|U|32
9BUP|1|S7|C|33
9BUP|1|S7|U|34
9BUP|1|S7|C|35
9BUP|1|S7|A|36
9BUP|1|S7|U|37
9BUP|1|S7|A|38
9BUP|1|S7|A|39
9BUP|1|S7|U|40
9BUP|1|S7|C|41
Current chains
- Chain S7
- tRNA
Nearby chains
- Chain S5
- 40S ribosomal protein S28e
- Chain S8
- Transfer RNA; tRNA
- Chain SA
- Small subunit ribosomal RNA; SSU rRNA
- Chain SI
- 40S ribosomal protein S5
- Chain SP
- 40S ribosomal protein S11
- Chain mR
- mRNA
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